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Old 06-27-2002, 12:47 PM   #1
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Exclamation Flying lemurs are primates-closest relatives to monkeys and apes??

That seems to be the gist of the research reported here. In current taxonomy, flying lemurs are not considered primates, but rather representatives of their own order. According to this research reported here, flying lemurs are not only primates, they are the closest relatives to the anthropoids (apes AND monkeys-the reporter used the term apes way too broadly). If true, this is big and startling news.

<a href="http://unisci.com/stories/20022/0620022.htm" target="_blank">http://unisci.com/stories/20022/0620022.htm</a>

Hopefully, the link will pan out. I actually got the article on alloprimate.

Posting on something other than the 9th Circuit Court of Appeals "under God" brouhaha.

Edited to add: I looked at skull pictures, and noticed all the skulls identified as primate had the characteristic completely enclosed orbits. The flying lemur skull did not. Any morphological taxonomy experts out there? The FL skull sure looks to be different from the primate skulls (prosimians included) as a group, in my relatively uninformed opinion.

[ June 27, 2002: Message edited by: ksagnostic ]

[ June 27, 2002: Message edited by: ksagnostic ]</p>
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Old 06-27-2002, 12:49 PM   #2
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I think the "half-apes" referred to here must be prosimians. Is this a cultural difference in referring to primates?
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Old 06-28-2002, 07:53 AM   #3
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I'm not sure that link is giving us the whole story...things like the below worry me greatly:


Quote:
“Flying lemurs have the same ancestors as the Anthropoidea, that is, apes from the New and Old Worlds, including human beings. We are more closely related to flying lemurs than we are to half-apes,” says Professor Arnason.
Among other things:

1) It's my understanding that there's no such thing as a New World ape, unless you want to count Homo sapiens who are considered to be of relatively recent extraction.

2) What the hell is a "half-ape"????

Quote:
“What this and earlier studies have shown,” continues Professor Arnason, “is that the classic orders are not as self-evident as we previously thought.

"In 1994, David Irwin and I discovered that whales and even-toed hoofed animals were not separate species; instead whales evolved from a special branch of even-toed hoofed animals. This branch is represented by the hippopotamus. Thus there is a closer relation between whales and hippopotamuses than between whales and any other now extant even-toed hoofed animals.
I know what he's talking about, but either the speaker Arnason was misquoted or he was having a very bad day ("not separate species" ????)

Or a more innocent explanation:

Arnason's english is not so good, plus the reporter doesn't know enough to understand what Arnason actually meant.

I'm developing a file on "clueless scientific reporting", here's another exhibit.

"UniSci: Daily University Science News" Sigh.


OTOH, I think what the actual finding might be is that the [non]flying [nonlemur]lemur order might be the order most closely related to the primate order. I'm not even sure if this is that unconventional, along with bats this seems to be a fairly common pre-molecular suggestion. Molecular studies have shaken things up considerably in the "relationships of placental mammal orders" category, although as usual actual disagreement is quite limited in that:

1) None of the placental orders has been placed outside of the placental mammals group (e.g., in marsupials, or reptiles or plants or any other of the innumerable logically possible arrangements)

2) None of the orders has been drastically nested within another, which is also a logically possible arrangement (e.g., the elephants could all nest as the closest relatives of humans, but don't).

These kinds of large-scale considerations are important to keep in mind when discussing agreements & disagreements of phylogenetic trees with creos. [/end undirected rant]


Don't have text access at the moment, maybe someone could find the PNAS abstract...

Quote:
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Old 06-28-2002, 09:59 AM   #4
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Thanks for your reply.

Like you, I found the terminology used in the article extremely weird. Since Anthropoida refers to apes and monkeys, I assumed that the author of the report and the scientist quoted were both using the term "apes" far, far more broadly than is proper in my experience.

I am also wanting to find that PNAS abstract. The article was confusing, and my impression of what was being claimed, that the colugo/flying lemur is more closely related to monkeys and apes than prosimians, might have been mistaken. Certainly, from what little I could see when I looked at the morphology of skulls, the colugo skull seemed to lack traits that were common among all the primate skulls (particularly the enclosed orbits). However, I do not pretend to be an expert on morphology.
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Old 06-28-2002, 10:15 AM   #5
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As it turns out, it's not such new news. This paper published in Nature, February 2001, showed essentially the same thing:

<a href="http://www.allmanlab.caltech.edu/bi216home/molectree_nature.pdf" target="_blank">Molecular phylogenetics and the origin of placental mammals</a>
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Old 06-28-2002, 02:39 PM   #6
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Quote:
Originally posted by MrDarwin:
<strong>As it turns out, it's not such new news. This paper published in Nature, February 2001, showed essentially the same thing:

<a href="http://www.allmanlab.caltech.edu/bi216home/molectree_nature.pdf" target="_blank">Molecular phylogenetics and the origin of placental mammals</a></strong>
Ah, here we go. The abstract makes things pretty clear:

Quote:
<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=112143 19&dopt=Abstract" target="_blank">http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=112143 19&dopt=Abstract</a>

Nature 2001 Feb 1;409(6820):614-8 Related Articles, Nucleotide, PopSet, Protein, Books, LinkOut


Molecular phylogenetics and the origins of placental mammals.

Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ.

Laboratory of Genomic Diversity, National Cancer Institute, Frederick, Maryland 21702, USA.

The precise hierarchy of ancient divergence events that led to the present assemblage of modern placental mammals has been an area of controversy among morphologists, palaeontologists and molecular evolutionists. Here we address the potential weaknesses of limited character and taxon sampling in a comprehensive molecular phylogenetic analysis of 64 species sampled across all extant orders of placental mammals. We examined sequence variation in 18 homologous gene segments (including nearly 10,000 base pairs) that were selected for maximal phylogenetic informativeness in resolving the hierarchy of early mammalian divergence. Phylogenetic analyses identify four primary superordinal clades: (I) Afrotheria (elephants, manatees, hyraxes, tenrecs, aardvark and elephant shrews); (II) Xenarthra (sloths, anteaters and armadillos); (III) Glires (rodents and lagomorphs), as a sister taxon to primates, flying lemurs and tree shrews; and (IV) the remaining orders of placental mammals (cetaceans, artiodactyls, perissodactyls, carnivores, pangolins, bats and core insectivores). Our results provide new insight into the pattern of the early placental mammal radiation.

[Here's the details]
The cohort Glires is, in turn, the sister group of primates, flying lemurs and tree shrews. Within primates, lemur (Strepsirhini) and tarsier (Tarsiiformes) were found to be sister taxa (bootstrap $80%) that were separated from anthropoids by a deep divergence. This contrasts with the widely held view that tarsiers are more
closely related to anthropoids than to Strepsirhini 17. Furthermore, although maximum parsimony and maximum likelihood analyses consistently supported the monophyly of Primates and the sister-group relationship between Dermoptera and Scandentia, distance-
based trees suggested primate paraphyly by placing flying lemurs as the sister group to anthropoids, and by placing tree shrews basal
among the three orders (Fig. 1). KishinoħHasegawa (parsimony and likelihood) and Templeton tests failed to reject either of these hypotheses (P .0.1 in all cases), which indicates that further sampling within Dermoptera and Scandentia may be required to fully resolve the deep, contemporaneous divergence among these three orders.
[/quote]

...which implies that flying lemurs would be quite close to primates and *perhaps* *within* them, but it's a close call back in 2001.

Anthropoid = apes + monkeys, right?

The primates page at the ToL has a diagram of where everything fits (traditionally at least):

<a href="http://tolweb.org/tree?group=Primates&contgroup=Eutheria" target="_blank">http://tolweb.org/tree?group=Primates&contgroup=Eutheria</a>


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Old 06-28-2002, 02:51 PM   #7
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Ah, here seem to be the recent articles:

Quote:
Mol Biol Evol 2002 Jul;19(7):1053-1065

<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=120821 25&dopt=Abstract" target="_blank">http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=120821 25&dopt=Abstract</a>

Rodent Phylogeny and a Timescale for the Evolution of Glires: Evidence from an Extensive Taxon Sampling Using Three Nuclear Genes.

Huchon D, Madsen O, Sibbald MJ, Ament K, Stanhope MJ, Catzeflis F, De Jong WW, Douzery EJ.

Laboratoire de Paleontologie, Paleobiologie et Phylogenie-CC064, Institut des Sciences de l'Evolution UMR 5554/CNRS, Universite Montpellier II, Place E. Bataillon, Montpellier Cedex 05, France. Department of Biochemistry, University of Nijmegen, The Netherlands. Biology and Biochemistry, Queen's University of Belfast, UK.

Rodentia is the largest order of placental mammals, with approximately 2,050 species divided into 28 families. It is also one of the most controversial with respect to its monophyly, relationships between families, and divergence dates. Here, we have analyzed and compared the performance of three nuclear genes (von Willebrand Factor, interphotoreceptor retinoid-binding protein, and Alpha 2B adrenergic receptor) for a large taxonomic sampling, covering the whole rodent and placental diversity. The phylogenetic results significantly support rodent monophyly, the association of Rodentia with Lagomorpha (the Glires clade), and a Glires + Euarchonta (Primates, Dermoptera, and Scandentia) clade. The resolution of relationships among rodents is also greatly improved. The currently recognized families are divided here into seven well-defined clades (Anomaluromorpha, Castoridae, Ctenohystrica, Geomyoidea, Gliridae, Myodonta, and Sciuroidea) that can be grouped into three major clades: Ctenohystrica, Gliridae + Sciuroidea, and a mouse-related clade (Anomaluromorpha, Castoridae + Geomyoidea, and Myodonta). Molecular datings based on these three genes suggest that the rodent radiation took place at the transition between Paleocene and Eocene. The divergence between rodents and lagomorphs is placed just at the K-T boundary and the first splits among placentals in the Late Cretaceous. Our results thus tend to reconcile molecular and morphological-paleontological insights.

[hey, tell that one to Wells]

[Here's the Arnason one...]

Proc Natl Acad Sci U S A 2002 Jun 11;99(12):8151-6

<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=120348 69&dopt=Abstract" target="_blank">http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=120348 69&dopt=Abstract</a>

Mammalian mitogenomic relationships and the root of the eutherian tree.

Arnason U, Adegoke JA, Bodin K, Born EW, Esa YB, Gullberg A, Nilsson M, Short RV, Xu X, Janke A.

Division of Evolutionary Molecular Systematics, University of Lund, S-223 62 Lund, Sweden. ulfur.arnason@gen.lu.se

The strict orthology of mitochondrial (mt) coding sequences has promoted their use in phylogenetic analyses at different levels. Here we present the results of a mitogenomic study (i.e., analysis based on the set of protein-coding genes from complete mt genomes) of 60 mammalian species. This number includes 11 new mt genomes. The sampling comprises all but one of the traditional eutherian orders. The previously unrepresented order Dermoptera (flying lemurs) fell within Primates as the sister group of Anthropoidea, making Primates paraphyletic. This relationship was strongly supported. Lipotyphla ("insectivores") split into three distinct lineages: Erinaceomorpha, Tenrecomorpha, and Soricomorpha. Erinaceomorpha was the basal eutherian lineage. Sirenia (dugong) and Macroscelidea (elephant shrew) fell within the African clade. Pholidota (pangolin) joined the Cetferungulata as the sister group of Carnivora. The analyses identified monophyletic Pinnipedia with Otariidae (sea lions, fur seals) and Odobenidae (walruses) as sister groups to the exclusion of Phocidae (true seals).
So, the PNAS study says primates are (a little) paraphyletic, the MBE study implies flying lemur sisterhood to primates...

I don't have text access at the moment, others may find more relevant stuff in them...

nic
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