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Old 03-18-2002, 06:41 AM   #21
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Originally posted by Douglas:

Couldn't all of that be explained as being examples of "common design features"? What, if any, are the reasons that the commonly found genes in mitochondrial genomes, and the "conserved genes/proteins involved in eye development", would necessarily imply "common descent"?
1. DNA is the material of inheritance. The patterns in it are passed down generations, with occasional mistakes.

2. If similarities are the result of a common designer, what do you make of different designs that achieve the same sort of thing? A different designer each, presumably. You want to propel yourself through water? A flat blade at the tail works well. Which god designed the horizontal flukes of cetaceans, and which the vertical ones of fish? You want to be sensitive to light? Which god made the mammalian eye, which the squid eye and which the insect eye?

3. I have mentioned some examples of your god’s wonderful designs to you before, in <a href="http://iidb.org/cgi-bin/ultimatebb.cgi?ubb=get_topic&f=3&t=001481&p=" target="_blank">this thread</a>. Your replies were -- how can I put this charitably? -- somewhat comical. Let’s remind everyone of them:

Quote:
He designed the laryngeal nerve to loop down under the aorta in the chest on its way from one side of the neck to the other.
Sorry, but what's the problem, exactly, with that?

He gave eyes that do not work to cave-dwelling and burrowing animals that don't need them.
Some day, they might. There will come a time when the curse will be lifted from the Earth, and Nature will be changed once again, this time, from being in bondage to death and corruption, to being "Edenic" again. Besides, not "needing" something doesn't say anything about whether something might benefit a creature - do those eyes not function any longer at all, from birth, in those creatures you mention?

He sentenced people without adequate diets to scurvy from vitamin C deficiency, yet gave us all an inoperative version of the gene that makes vitamin C in most other mammals.
Probably the result of the curse due to the sin of Adam and Eve. Not a flaw in the Designer or His design, but a free-will character flaw in His creature (Adam).

Curiously, He did the same for the great apes only, and 'broke' the gene in exactly the same way in them.
Well, all Creation became cursed because of Adam's sin - all living creatures suffer death, as well. So, there will be some similarities in how some creatures are "cursed" (different diseases which afflict each, and so forth).

He put female parts in male flowers.
So? Flowers don't marry. Also, it could be a direct result of the Curse - or, it could be the indirect result of the Curse, through Satan's "handiwork" (if you read the account of Moses' encounter with the magicians of Egypt, as told in Exodus, it is clear that Satan has certain powers over the material world).

He put wings on flightless birds and beetles.
So? It could be part of the Curse, again. One day, they might have their flight restored to them (assuming they once flew).

He put specialized pharyngeal ‘teeth’ in the Chinese grass carp, but omitted to give them the gut bacteria that ruminants have (or even their own enzymes), so that most of their food is passed out undigested.
The "Curse", again, possibly or probably. Next.

He gave us the same system of muscles and sympathetic nerves which in most mammals raises the hairs in response to cold or fear, despite humans (especially women) generally having little body hair (goosebumps being sooo useful)...
Goosebumps need not be outwardly "useful", but inwardly meaningful (God is not merely concerned with the physical aspects of humans, but with their soul). As a highly "emotional"/physical sign to an individual of their own fear (not their seeing their goosebumps, but their feeling their goosebumps), "goosebumps" would be "useful".

...and the post-auricular muscle, which in other mammals moves the ears to point towards sounds (the ability of some people to wiggle their ears being one of His lesser-appreciated gifts of course).
I can wiggle my ears...individually, up and down. I can't hear all that well, though. I must have a bad design. I can't imagine having paralyzed ears. It must be awful. But, you are seriously suggesting that "movable ears" is evidence of "bad design"?

He designed haemoglobin -- which has more affinity for carbon monoxide than for oxygen.
As evidence that mankind has, now that Adam has sinned, more "affinity" for sin and lies than for holiness and truth. Pretty good "designing", in my opinion.
... and so on. Nuff said?

Quote:
[Ref chromosome fusion in ancestral humans]
Could you describe this "evidence" in a bit more detail, and at a level a layperson like myself could understand (just not too technical, or at least just not exclusively technical)?
Others can provide the technical. In layman's terms, from the sequences in the chromosomes, the ones that apparently fused have been identified. Chromosomes have easily identifiable end bits, to do with how they work during cell division. Lo and behold, the supposedly fused human ones have these end bits in the middle of the single, longer chromosome.

TTFN, Oolon
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Old 03-18-2002, 02:41 PM   #22
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Oolon,

You said:


Quote:
1. DNA is the material of inheritance. The patterns in it are passed down generations, with occasional mistakes.
Thank you for the explanation. I was aware of all that, however.

Quote:
2. If similarities are the result of a common designer, what do you make of different designs that achieve the same sort of thing? A different designer each, presumably.
I don't recall reading any "Designer Manual For Rules of Design" which said that a Designer could not use different designs to achieve the same sort of thing. I also don't recall reading any such "manual" which said that a Designer could not use similar designs across species. The point being that the "evidence" in the genes is completely explainable (based on what I have read so far) by a "Designer".

Quote:
You want to propel yourself through water? A flat blade at the tail works well. Which god designed the horizontal flukes of cetaceans, and which the vertical ones of fish?
The same God Who loves variety, and Who has more than a merely "technical engineering" imagination.

Quote:
You want to be sensitive to light? Which god made the mammalian eye, which the squid eye and which the insect eye?
Certainly not the god, "Ramanas". I would say it was the same God Who thunk up all the various creatures in the first place. Since when is a "creator" of anything required to stick within certain design "limits"?

Quote:
3. I have mentioned some examples of your god's wonderful designs to you before, in this thread. Your replies were -- how can I put this charitably? -- somewhat comical...
... and so on. Nuff said?
Yes, I think that should be sufficient to show that Christianity quite reasonably explains away the "argument from imperfect design". And my replies, though perhaps comical to you, were quite reasonable, and quite adequately answered your points.

Quote:
Others can provide the technical. In layman's terms, from the sequences in the chromosomes, the ones that apparently fused have been identified. Chromosomes have easily identifiable end bits, to do with how they work during cell division. Lo and behold, the supposedly fused human ones have these end bits in the middle of the single, longer chromosome.
Well, I guess I would need to know more about the "end bits", and what they are and what they can be used for. A slightly more technical treatment than your (appreciated) explanation would probably be helpful.


In Christ,

Douglas

[ March 19, 2002: Message edited by: Douglas J. Bender ]</p>
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Old 03-18-2002, 09:10 PM   #23
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OC:
2. If similarities are the result of a common designer, what do you make of different designs that achieve the same sort of thing? A different designer each, presumably.
DJB:
I don't recall reading any "Designer Manual For Rules of Design" which said that a Designer could not use different designs to achieve the same sort of thing. I also don't recall reading any such "manual" which said that a Designer could not use similar designs across species. The point being that the "evidence" in the genes is completely explainable (based on what I have read so far) by a "Designer".
Which means that this hypothesis of a supposed "Designer" could account for ANYTHING. Yes, ANYTHING. Douglas J. Bender, where is the falsifiability in your hypothesis? What would make you think that some feature was NOT designed?

Descent with modification, a.k.a. evolution, is a much more natural explanation. Different "designs" would be invented in different lineages, and would persist because they would be too difficult to change once invented -- a common feature of many human designs, and a side effect of us being far from omnipotent.

Also, evolution explains biogeography very naturally. Why do oceanic islands have their own distinctive fauna -- fauna related to that of nearby landmasses? Why do the Galapagos Islands contain giant turtles but not giant rats? Why do only the Americas contain rattlesnakes and cactus plants, despite their ability to live elsewhere? Why do woodchucks live in Northern-Hemisphere continents and wombats in Australia?

And, O DJB, what makes you so sure that there are not more than one of them?

Quote:
OC:
You want to propel yourself through water? A flat blade at the tail works well. Which god designed the horizontal flukes of cetaceans, and which the vertical ones of fish?
DJB:
The same God Who loves variety, and Who has more than a merely "technical engineering" imagination.
But this feature is universal in both groups, and has a simple explanation in evolution: an ancestral fish had sprouted vertical fins, and an ancestral cetacean had sprouted horizontal flukes -- and their descendants have faithfully preserved these features, because a changeover would interfere with their swimming ability.

Also, vertebrate eyes and squid eyes each have characteristic architectures -- one for vertebrates and one for squid. This includes the backwards retinas of vertebrates and the right-way retinas of squid. If some ancestral fish and some ancestral squid had developed eyes from light-sensitive spots, then their descendants would have faithfully preserved those designs,

Quote:
DJB:
Yes, I think that should be sufficient to show that Christianity quite reasonably explains away the "argument from imperfect design". ...
At the expense of throwing away all falsifiability. Also, humanity has been in existence for only a small part of the Earth's history, and design imperfections and carnivores have been around for MUCH longer than our species.
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Old 03-18-2002, 10:51 PM   #24
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Quote:
Originally posted by Douglas J. Bender(in part):
<strong>
I don't recall reading any "Designer Manual For Rules of Design" which said that a Designer could not use different designs to achieve the same sort of thing. I also don't recall reading any such "manual" which said that a Designer could not use similar designs across species. The point being that the "evidence" in the genes is completely explainable (based on what I have read so far) by a "Designer".
</strong>
Only if you call "the designer did it" (or "my cat did it last Thursday" or "the IPU sneezed it into existence") an explanation. Such pseudo-explanations could explain anything and thus explain nothing, as someone once said.

A real explanation should specify 1)a mechanism and 2) things that we will not observe - e.g. a bird beak on a mammalian body. A designer (of the ID type, i.e. with unlimited and unspecified powers) could do it; evolution cannot.

BTW, what about features which obviously work at cross-purposes (e.g. sonar in bats vs. anti-sonar in moths) ? Two designers, or one who wants to see who is smarter: he or he ?

Regards,
HRG.
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Old 03-19-2002, 02:22 AM   #25
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Originally posted by lpetrich:
<strong>

At the expense of throwing away all falsifiability. </strong>
Which, just to make it clear since that's a slightly technical term (we may be horrified at it, but the 'uninitiated' may just go "So?"), means 'At the expense of ever being able to tell if it's right or not'. No matter what the evidence, the idea can be made to fit it. Since you can never tell if it's right or wrong, it is worthless as an explanation.

Oolon
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Old 03-19-2002, 05:25 AM   #26
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Oolon,


You said:
Quote:
No matter what the evidence, the idea can be made to fit it. Since you can never tell if it's right or wrong, it is worthless as an explanation.
You don't see how this applies equally, in the case of "explaining" the similarities and differences in the "designs" of creatures, to both Evolution and a "Designer"? You realize I was rebutting your claim that the fact that there are both similarities and differences in the "design" of various creatures would imply either that there were several "Designers" or there were none.


In Christ,

Douglas

[ March 19, 2002: Message edited by: Douglas J. Bender ]</p>
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Old 03-19-2002, 06:07 AM   #27
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RufusAtticus,


Quote:
Hey, Douglas, you appear to believe in kinds. Will you look at my challenge in this thread?
I "believe in" kinds. And as I have the time, I will look at your "challenge" in that thread, though I don't want to "spread myself too thin", as I had done at one point in my previous sojourn here.


I had asked:
Quote:
Couldn't all of that be explained as being examples of "common design features"? What, if any, are the reasons that the commonly found genes in mitochondrial genomes, and the "conserved genes/proteins involved in eye development", would necessarily imply "common descent"?
You responded:
Quote:
You appear to be advocating that similar designs are the result of a common designer. There are many problems with this from the start.
I am saying that "similar designs" CAN BE the result of a common designer. And I am asking what is the "evidence" or "proof" that two dissimilarly designed "somethings" could not have, or would not have, been designed by the same designer.

Quote:
Pantheism: Do dissimilar designs imply different creators?
Why should it? Can one architect come up with "dissimilar designs" for homes, and yet be known for a particular design?

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Identity: What evidence do you have that divine creators even exist?
That's an entirely separate issue than arguing from similarity or dissimilarity of design.

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The Tree: The relationships of organisms do not fit design/niche. For instance, aquatic organisms, like whales, are more related to land animals than other aquatic animals.
Are you equating "design" with a "niche"? Are you saying that if creatures are designed, they must fit into a clearly identifiable "niche" pattern? So what if a "Designer" wanted to create some mammals to be aquatic? Would you feel qualified to ask Him, "Hey, You realize this isn't following the acknowledged design pattern, don't You?"

Quote:
Basically, gene similarities, in toto, do not fit "common design" because the relationships we observe do not make design sense. On the other hand, they match up well with the relationships inferred from the fossil record and extant organisms.
And what "design sense" is it that they do not "fit" ("in toto")? One which we humans have, in an ad hoc fashion, come up with? Are there no examples of things in the fossil record which do not appear to "fit" the relationships implied by evolution? And just how "falsifiable" is evolution if it can account for, via the idea of "convergent evolution", similarly designed features which are clearly not related by "common descent"?


I had said:
Quote:
I suppose I should ask what "highly conserved" means, exactly, before asking why "genes/proteins that are highly conserved from yeasts to humans" necessarily implies "common descent".
You responded:
Quote:
Highly conserved refers to genes found in diverse, and ancient, sets on organisms that serve key functions in the cell and evolve very, very slowly.
That's begging the question of whether those "sets of genes" are actually "ancient", and whether those genes have actually "evolved".

Quote:
For most genes, it is impossible to calculate ancient relationships, like between plants, animals, and fungi.
Well, that's quite an admission. I wonder how it is that it is possible to calculate the "ancient relationships" of a minority of genes, however.

Quote:
This is because after a certain time, so much evolution has occurred that the relationships appear to be random. However, conserved genes evolve slowly and preserve data pertaining to relationship.
Sounds to me like what is happening is that when some genes bear some similarity to each other, it is taken as evidence that they have "evolved slowly and preserved data pertaining to relationship" - but that would just be a circular argument. To say, "'Conserved' genes prove common descent", would be to ASSUME that similar genes have been "conserved" [i.e., in part that they have been around for a long time], and uses this assumption to assert the claim that therefore these genes are related by "common descent".


I had said:
Quote:
I don't claim to know much about genetics or biology, but from what I do understand, it seems to me that "common genes" could just as well be the result of a "common Designer" as the result of a "common 'Ancestor'". Function, as opposed to relation.
You replied:
Quote:
Then, in all honesty, you should learn more. It will be much easier for you to learn genetics if you drop this attitude that you know better than the geneticists and other scientists.
Nice try, but I do not have the attitude that I "know better than the geneticists and other scientists". I do believe that when it comes to understanding implications and evidence, I am not at a disadvantage to them.


You said, then quoted me, then replied:
Quote:
Referring to chimp and human chromosomes:

"Could you describe this 'evidence" in a bit more detail, and at a level a layperson like myself could understand (just not too technical, or at least just not exclusively technical)? Thanks."

This is rather funny since Scigirl presented this exact thing to you months ago.
What was that? Did you say, "MONTHS ago"? I thought you did. Now, why do you find it "rather funny" that I would ask for the "evidence" regarding chimp and human chromosomes in a bit more detail, considering that it has been apparently some "months" since I've possibly looked at that "evidence"?


In Christ,

Douglas

[ March 19, 2002: Message edited by: Douglas J. Bender ]</p>
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Old 03-19-2002, 10:16 AM   #28
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Quote:
RufusAtticus: Do dissimilar designs imply different creators?
DJB:
Why should it? Can one architect come up with "dissimilar designs" for homes, and yet be known for a particular design?
Human designers often have characteristic styles, which sometimes enables one to identify them.

Quote:
RA:
Basically, gene similarities, in toto, do not fit "common design" because the relationships we observe do not make design sense. On the other hand, they match up well with the relationships inferred from the fossil record and extant organisms.
DJB:
And what "design sense" is it that they do not "fit" ("in toto")? One which we humans have, in an ad hoc fashion, come up with? Are there no examples of things in the fossil record which do not appear to "fit" the relationships implied by evolution? And just how "falsifiable" is evolution if it can account for, via the idea of "convergent evolution", similarly designed features which are clearly not related by "common descent"?
DJB has a lot to learn about molecular evolution, it would seem. A reasonable designer would always use the same sequence for the same function; I'm extrapolating from my experience as a computer programmer. However, many genes, despite having the same function, have different sequences, and one can often construct a family tree from these differences -- a family tree that often closely agrees with family trees constructed using macroscopic-feature criteria, and which sometimes shows an approximately-constant rate of mutation accumulation over time.

This result has been a great success for evolutionary biology, and creationists are forced to come up with desperate, ad hoc hypotheses to account for it.

Quote:
RA:
Highly conserved refers to genes found in diverse, and ancient, sets on organisms that serve key functions in the cell and evolve very, very slowly.
DJB:
That's begging the question of whether those "sets of genes" are actually "ancient", and whether those genes have actually "evolved".
"Highly conserved" is an inference that comes from comparing sequences; some genes have sequences that are very similar across very different-looking species, though still not quite identical. It is inferred from this that the large majority of mutations of such genes are bad ones, producing poorly-functional protein or RNA sequences, meaning that only a tiny fraction of mutations survives. This tiny fraction would be because the protein/RNA sequence is highly constrained by its function, which is what is found when one looks more closely.
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Old 03-20-2002, 05:44 PM   #29
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Douglas,

Quote:
I am saying that "similar designs" CAN BE the result of a common designer. And I am asking what is the "evidence" or "proof" that two dissimilarly designed "somethings" could not have, or would not have, been designed by the same designer.
Yes, similar designs can be the result of a common designer. That being said, the next question is does this have anything to do with life on this planet. The short answer is "no." Proposing abstractly that "things" can be intelligently designed is far from showing that life is intelligently designed. Until you can demonstrate that life was designed intelligently, it is fruitless to debate on whether it has one or more designers.

Quote:
Why should it? Can one architect come up with "dissimilar designs" for homes, and yet be known for a particular design?
Well, if similar designs are the result of a common designer, than the possibility must exist that dissimilar designs are not the result of a common designer. You appear to have not even addressed this possibility, but you should if you plan on continuing.

Quote:
Are you equating "design" with a "niche"?
Of course, what other why is there to view design? Shouldn’t an intelligent designer be designing for the niche? What other thing is there to design for? You don’t design a submarine with out considering that it will go under water do you?

Quote:
Are you saying that if creatures are designed, they must fit into a clearly identifiable "niche" pattern? So what if a "Designer" wanted to create some mammals to be aquatic? Would you feel qualified to ask Him, "Hey, You realize this isn't following the acknowledged design pattern, don't You?"
The point is that no intelligent designer would build a submarine using a tractor as the basis.

Quote:
And what "design sense" is it that they do not "fit" ("in toto")?
For one the relationships of organisms do not make sense if viewed as designed. (See above.) Secondly, there are too many features of organisms that do not make sense if viewed as designed. (Such as the vertebrate eye.)

Quote:
Are there no examples of things in the fossil record which do not appear to "fit" the relationships implied by evolution?
Evolution doesn’t imply specific relationships. Evolution specifies that relationships exist, but it doesn’t demand that birds evolved from dinosaurs for example. The fossil record, genetic data, and morphological comparisons are used to determine actual relationships. So, no, there is not a single fossil that contradicts evolution.

Quote:
And just how "falsifiable" is evolution if it can account for, via the idea of "convergent evolution", similarly designed features which are clearly not related by "common descent"?
Convergent evolution is not an ad hoc explanation but an observation. There are plenty of things that would falsify current evolutionary theory, such as proof that the earth is only 6000 years old, a time frame too short for evolution to account for the diversity of life on earth. Absolute, obvious, and abrupt barriers between taxa would disprove universal common descent.

Quote:
That's begging the question of whether those "sets of genes" are actually "ancient", and whether those genes have actually "evolved".
They’re both.

Quote:
Well, that's quite an admission. I wonder how it is that it is possible to calculate the "ancient relationships" of a minority of genes, however.
Because they evolve slower: effective nucleotide substitution rate is low.

Quote:
Sounds to me like what is happening is that when some genes bear some similarity to each other, it is taken as evidence that they have "evolved slowly and preserved data pertaining to relationship" - but that would just be a circular argument. To say, "'Conserved' genes prove common descent", would be to ASSUME that similar genes have been "conserved" [i.e., in part that they have been around for a long time], and uses this assumption to assert the claim that therefore these genes are related by "common descent".
If you were actually more familiar with evolutionary biology, you would understand that this is not the case. Conserved genes are an observation not a definition. It is also observed that such genes have very constrained functions; they cannot very much without destroying the ability of the organism to compete. Such proteins were pretty much optimized hundreds of millions of years ago. This is not an assumption, but the result of decades of research and debate. Please get more familiar with the literature before stating what is assumed or not.

Quote:
Nice try, but I do not have the attitude that I "know better than the geneticists and other scientists.”
Really? Then what did you mean by “I believe that I, biological layman that I am, can discern valid and invalid science better than many or most trained and professional scientists?” You said this in the formal debate with Scigirl. Have you changed your mind since then?
Quote:
What was that? Did you say, "MONTHS ago"? I thought you did. Now, why do you find it "rather funny" that I would ask for the "evidence" regarding chimp and human chromosomes in a bit more detail, considering that it has been apparently some "months" since I've possibly looked at that "evidence"?
Well, reread all of what Scigirl posted. She not only explained it in clear detail, but provided links to additional material.

-RvFvS
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Old 03-21-2002, 01:28 AM   #30
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I am saying that "similar designs" CAN BE the result of a common designer. And I am asking what is the "evidence" or "proof" that two dissimilarly designed "somethings" could not have, or would not have, been designed by the same designer.
If you make the claim that there's a designer, then you have the burden of proof, Douglas.

Quote:
And what "design sense" is it that they do not "fit" ("in toto")? One which we humans have, in an ad hoc fashion, come up with? Are there no examples of things in the fossil record which do not appear to "fit" the relationships implied by evolution? And just how "falsifiable" is evolution if it can account for, via the idea of "convergent evolution", similarly designed features which are clearly not related by "common descent"?
Well, take <a href="http://iidb.org/cgi-bin/ultimatebb.cgi?ubb=get_topic&f=58&t=000407" target="_blank">cytochrome C</a> for instance. The majority of this protein sequence is unnecessary, and in fact, one can take the cytochrome c sequence of a human and replace the sequence (which is clearly different from a human) of a yeast with it with no discernable change. And yet, the similiarities and differences match evolutionary predictions incredibly well.

Furthermore, no, there currently are no examples of fossils that don't fit evolutionary theory. Evolution explains convergence quite well - obviously not every organism is going to take the same evolutionary path to achieve a given function (note that evolution is not with purpose). Convergent evolution is, in fact, powerful evidence FOR common descent, not against it.

Quote:
That's begging the question of whether those "sets of genes" are actually "ancient", and whether those genes have actually "evolved".
The evidence for evolution is so literally overwhelming that the assumption is quite warranted.

Quote:
Sounds to me like what is happening is that when some genes bear some similarity to each other, it is taken as evidence that they have "evolved slowly and preserved data pertaining to relationship" - but that would just be a circular argument. To say, "'Conserved' genes prove common descent", would be to ASSUME that similar genes have been "conserved" [i.e., in part that they have been around for a long time], and uses this assumption to assert the claim that therefore these genes are related by "common descent".
It's quite simple, really, Douglas. Evolutionary theory makes the prediction that changes in DNA will be conserved. If we see examples of this in nature then this prediction has come true. It's not circular reasoning in the slightest. It's also a way that evolution could be potentially falsified: if the prediction is untrue then either the theory is wrong, or it's been misinterpreted.
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